PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G00930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23574.2 Da    PI: 6.9244
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G00930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.67.9e-241056248
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                     rien   rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+
  OBART08G00930.1 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD 56
                     8********************************************97 PP

2K-box31.95.4e-1280158986
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                      ++  +    +qe+  Lk+ei+ Lq+ +R + G+  +  ++++eL+ Le+ Le  + +iRs K+ +l++  e lq+k  e
  OBART08G00930.1  80 ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 158
                      4455556679**********************998626************************************99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.917161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-26176IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-33160IPR002100Transcription factor, MADS-box
CDDcd002658.14E-39279No hitNo description
PRINTSPR004041.2E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.69185175IPR002487Transcription factor, K-box
PfamPF014864.4E-1386155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT  60
GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRYIY GNRANEHMTV  120
EELNALERYL EIWMYNIRSA KEGMLKAANE ILQEKIVEQN GLIDVGMMVA DQQNGHFSTV  180
PLLEEITNPL TILSGYSTCR GSEMGYSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A8e-15370268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B8e-15370268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C8e-15370268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D8e-15370268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A9e-15370268Myocyte-specific enhancer factor 2A
3kov_B9e-15370268Myocyte-specific enhancer factor 2A
3kov_I9e-15370268Myocyte-specific enhancer factor 2A
3kov_J9e-15370268Myocyte-specific enhancer factor 2A
3mu6_A6e-15370268Myocyte-specific enhancer factor 2A
3mu6_B6e-15370268Myocyte-specific enhancer factor 2A
3mu6_C6e-15370268Myocyte-specific enhancer factor 2A
3mu6_D6e-15370268Myocyte-specific enhancer factor 2A
3p57_A9e-15370268Myocyte-specific enhancer factor 2A
3p57_B9e-15370268Myocyte-specific enhancer factor 2A
3p57_C9e-15370268Myocyte-specific enhancer factor 2A
3p57_D9e-15370268Myocyte-specific enhancer factor 2A
3p57_I9e-15370268Myocyte-specific enhancer factor 2A
3p57_J9e-15370268Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033260.0AB003326.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:R3786.
GenBankAK0691220.0AK069122.1 Oryza sativa Japonica Group cDNA clone:J023004P21, full insert sequence.
GenBankAY5519250.0AY551925.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650791.11e-151PREDICTED: MADS-box transcription factor 26
SwissprotA2YQK91e-153MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-153MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0D3GVP91e-154A0A0D3GVP9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I6J01e-154A0A0E0I6J0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QDJ41e-154A0A0E0QDJ4_ORYRU; Uncharacterized protein
TrEMBLA3BP021e-154A3BP02_ORYSJ; Uncharacterized protein
STRINGBGIOSGA027872-PA1e-154(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-52AGAMOUS-like 12